York University Core Molecular Biology and DNA Sequencing Facility Homepage


Last Update: 24 August 2005

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Table of Contents

Core Facility Information
 Organisms
 Very Useful Links
 Sequence Analysis Sites
Journals/Publications
 RNA Sequence Analysis Sites
 Organizations
 Molecular Evolution Sites
Database Sites
 Teaching
 BioInformatics Sites
 Commercial
Human Genome Project
 Funding Searches
 Search Engines
 Miscellaneous Links

[York University] [York University Department of Biology] [Graduate Program in Biology]

News: 8 October 2007. Recent Nobel Laureate Mario Capecchi [link] was a featured speaker in the AGSBS 30th Symposium (2003) [poster] organized by graduate students in the Biology Graduate Program.
Last Update: 10 June 2009

Facilities Information

Sequencing Core Facility

People in the Facility Automated DNA Sequencing Facility DNA Sequencing Order Form Core Datafiles

Proteomics Facility

People in the Facility Instruments Services Protocols

Imaging Facility

 People in the Facility Instruments Imaging Links


Very Useful Links

  • Journals and Other Links at Blencowe Lab
  • Canadian Institutes of Health Research (CIHR)
  • European Bioinformatics Institute (EBI)
  • European Molecular Biology Laboratory (EMBL)
  • ExPaSy Molecular Tools
  • In Silico Molecular Biology Experiments
  • Science NextWave: Jobs and Careers
  • SIRI MSDS Database
    • CCOHS MSDS Database
  • IPCS INTOX Database
    		•
  • Laboratory Safety Incidents
  • Social Issues in Science
  • NSERC - Natural Sciences and Engineering Research Council
  • NCBI (PubMed, Sequences and BLAST)
  • BioDirectory: Molecular Biology Tools
  • Online Analysis Tools
  • Centre for Computational Biology
  • Web of Science Citation Search
  • VectorDB Home
  • EMBOSS Applications


    • Journals/Publications

  • Science Direct
  • Archives of Biochemistry and Biophysics
  • Annual Reviews
  • Wiley Interscience
  • Cell Press Home Page
  • U of T List of Journals for Life Sciences
  • Elsevier Science
  • EMBO Journal
  • Genome Research
  • PubCrawler (daily NCBI search updates)
    		•
  • Highwire Press (Stanford University)
  • Ingenta Connect
  • Journal of Molecular Biology Online
  • Molecular Biology of the Cell: MBC ONLINE
  • Nucleic Acids Research (NAR)
  • Journal of Biological Chemistry
  • Oxford University Press Journals
  • Proceedings of the National Academy of Sciences USA
  • Springer Verlag
  • LabVelocity


    • Organizations

  • ATCC - American Type Culture Collection
  • Association of Universities and Colleges of Canada (AUCC)
  • Canadian Federation of Biological Societies- CFBS
  • Canadian Society for Biochemistry, Molecular and Cellular Biology
  • CIAR Evolutionary Biology
  • Association of Faculties of Medicine of Canada
  • Cold Spring Harbor Laboratory
  • European Molecular Biology Laboratory (EMBL)
  • FEBS: Federation of European Biochemical Societies
  • FASEB : Federation of American Societies for Experimental Biology
    		•
  • Genetics Society of Canada
  • Genetics Society of America
  • HUM-MOLGEN - meetings, positions etc...
  • Canadian Institutes of Health Research (CIHR)
  • NCGR - National Center for Genome Resources
  • NSERC - Natural Sciences and Engineering Research Council
  • National Center for Biotechnology Information
  • National Human Genome Research Institute
  • Protein Engineering Network Center of Excellence (PENCE)
  • The Canadian Health Network at Health And Welfare Canada


    • Database Sites

  • BLAST queries
  • European Bioinformatics Institute (EBI) Home Page
  • Fasta Database Search Form
  • The BioGrid (Interaction Datasets)
  • IARC p53 Database
  • IU euGenes
  • MIPS : Yeast Complete Sequence
  • NCCB Vector Database
  • Pathway/Genome Databases
  • PharmaBase: Cellular Physiology and Pharmacology Database
  • Saccharomyces Genome Database (SGD)
  • SIRI MSDS Database
  • CCOHS MSDS Database
  • TIGR Genome Databases
  • Biobase - Biological Databases (commercial)
  • Human Genome Browser
  • Human Protein Reference Database
  • VectorDB Home


    • Organisms

  • AAtDB: An Arabidopsis thaliana Database
  • Arabidopsis Functional Genomics Tools (Provart Lab)
  • AceDB
  • Arabidopsis Expressed Sequence Tags (EST) Mapping project
  • Caenorhabditis elegans
  • Candida Genome Database
  • Candida albicans Physical Map
  • DictyBase (Dictyostelium Bioinformatics)
  • FLYBASE
  • Fungal Genetics Stock Center (mainly Neurospora and Aspergillus )
  • Interesting YEAST Links
  • Mouse Genome Database (MGD)
  • S. Pombe Genome Project
    		•  Tetrahymena Databases
  • Tetrahymena Genome Database
  • Tetrahymena Genomics - UCSB/orias
  • Tetrahymena HOMEPAGE (@ Gorovsky Lab)
  • Tetrahymena ESTS (NRC)
  • Tetrahymena Database (TIGR gene index)
  • Tetrahymena ESTS (thermophila)
  • The E. coli genome center at Wisconsin
  • The Forsburg Lab Home Page (Pombe)
  • Open Directory: Microbiology
  • All the Virology on the WWW
  • Yeast transformation/2 hybrid
  • Zebra Fish Server


    • Sequence Analysis Sites

  • BCM Search Launcher: Multiple Sequence Alignments
  • Biobox - Bioinformatics Services for Researchers
  • ExPaSy Molecular Tools
  • Exon Finder
  • Institut Pasteur Biological Software
  • Attotron Sequence Analysis Tools
  • In Silico Molecular Biology Experiments)
    		•
  • Munich Information Center for Protein Sequences
  • Translate DNA sequence (BioTools)
  • SMART protein domain identification
  • SPIDEY - mRNA to Genomic Alignment
  • WEBCUTTER : Restriction Mapping Facility
  • Regulatory Sequence Analysis Tools
  • EMBOSS Explorer

    • RNA Sequence Analysis Sites

  • RNA WORLD (several interesting links)
    		•
  • Rensselaer Bioinformatics Web Server (RNA folding)

    • BioInformatics Sites

  • bioinformatics.ca
    		•
  • Canadian Bioinformatics Resource

    • Human Genome Project

  • Celera Genomics
  • Database Mining the Human Genome
  • Human Genome Organization
  • Human Genome Diversity Project
    		•
  • Nature OmicsGateway
  • Human Genome Sciences
  • Incyte Genomics
  • National Human Genome Research Institute

    • Molecular Evolution Sites

  • Classification Society of North America
  • Express Routes to Clades
  • Molecular Evolution at McMaster
    		•
  • PHYLIP Home Page
  • Phylogenetic Analysis Computer Programs
  • The Tree of Life Home Page


    • Teaching

  • Association for Biology Laboratory Education
  • Biochemical/Biotechnology/Chemistry Software
  • Biochemistry Animations
  • BIOLAB
  • Cell Biology Education (ASCB)
  • Centre for the Support of Teaching (York)
  • Ciliates in the Classroom
    		•
  • Virtual Embryo (U. of Calgary)
  • Microbes.info - The Microbiology Information Portal.
  • Mendel Web
  • Main Metabolic Pathway on the Internet
  • KEGG Pathway Database
  • IUBMB-Nicholsen Metabolic Maps
  • Elements Database - Periodic Table


    • Commercial

  • Beckman
  • Beckman BioResearch
  • Bio Med Net
  • Bio Supply Net
  • BioTechniques
  • BioInform
  • Boehringer Ingelheim Canada
  • Clontech
    		•
  • Dalton
  • Eppendorf
  • Fermentas
  • Invitrogen (Gibco BRL)
  • Millipore
  • Molecular Dynamics
  • NatBio: National Biotech Register
  • New England BioLabs
    		•
  • Oxford Molecular (Acelrys)
  • Pall Corporation
  • Peptide Express
  • Perkin Elmer
  • Promega
  • R & D Systems
  • SciCentral
  • Sigma-Aldrich
  • The BioToolKit: Biological Resources


    • Funding Search

  • Community of Science
  • UBC: Funding Program Search Engine
    		•
  • Funding Guide for International Science and Technology
  • York University Office of Research Administration



    • Miscellaneous Links

  • 2-hybrid screens: useful information including false positives
  • Stanford Genomic Resources
  • BIOSCI/bionet Newsgroup Network for Biology
  • Biotech Resource Gateway
  • BioTalent Canada (Canadian biotechnology sector jobs)
  • Biospace: Life Science Information Services
  • Interesting Genetic Sites
  • IU Bio Archive
  • EMJL Job Listing
  • Chromatin Structure and Function
  • McPharmNet (Molecular Pharmacology)
  • Molecular Evolution & Organelle Genomics
  • Pedro's BioMolecular Research Tools
  • Protein Structure (Interesting Links)
  • Therapeutic Products Programme
  • Signalling Networks (Woodgett Lab)
  • Useful Links at Blencowe Lab
  • Yeast two-bybrid
  • Poster Production Service
    		•


    Search Engines

  • All in One Search Page
  • Agricola: Article Citation Database
  • Starting Point
  • Cuil Search Engine
    		•
  • LYCOS
  • Yahoo
  • Web Crawler
  • Google Search Engine
    		•
  • Google Scholar
  • Altavista
  • Scirus Science Search Engine
  • NCBI Pubmed


    • Problems, suggestions or comments concerning our homepage?
    Any links you think we should add?
    Send e-mail to     Dr. Roger Lew, or Dr. Ron E. Pearlman at ronp@yorku.ca

    Ron Pearlman's Web Site